[Bioperl-l] No error message is given for a warning (EUtilities)

Smithies, Russell Russell.Smithies at agresearch.co.nz
Sun Jul 11 21:08:02 EDT 2010


Take a look at the deobfuscator:
http://bioperl.org/cgi-bin/deob_interface.cgi?Search=Search&module=Bio%3A%3ADB%3A%3AEUtilities&sort_order=by+method&search_string=Bio%3A%3ADB%3A%3AEUtilities

Details all the methods including those that are inherited.

--Russell


> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Peng Yu
> Sent: Monday, 12 July 2010 12:05 p.m.
> To: Chris Fields
> Cc: bioperl-l at lists.open-bio.org
> Subject: Re: [Bioperl-l] No error message is given for a warning
> (EUtilities)
> 
> On Sun, Jul 11, 2010 at 4:16 PM, Chris Fields <cjfields at illinois.edu>
> wrote:
> >
> > On Jul 11, 2010, at 2:54 PM, Peng Yu wrote:
> >
> >> ...
> >> Is there a way to suppress such error and warning message as they are
> >> not interesting to me? (As I can always check how many pubmed ids
> >> returned to determine if the search results anything).
> >>
> >> --
> >> Regards,
> >> Peng
> >
> > Setting -verbose to -1 should work.
> 
> I don't see such an option in perldoc Bio::DB::EUtilities. Would you
> please let me know where it is documented? In fact, I don't see the
> document for new() in Bio::DB::EUtilities. Would you please add this
> to the document? Thank you!
> 
> --
> Regards,
> Peng
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
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