[Bioperl-l] Intergenic regions

Adam Witney awitney at sgul.ac.uk
Mon Jul 12 11:37:05 EDT 2010


If the genomes are already annotated then I guess you could just the Bio::Seq modules to pull out the intergenic regions. If there is no annotation yet then you would need to run some kind of gene prediction software first eg Genescan, Glimmer (google will throw up several choices).

cheers

adam

On 12 Jul 2010, at 15:56, shalabh sharma wrote:

> Hi All,
>        I am trying to find intergenic regions/sequences in genomes. Is
> there any bioperl module for that ? or any other package/software available?
> 
> I would really appreciate if anyone can help me out.
> 
> Thanks
> Shalabh
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