[Bioperl-l] Coordinate converter?

Dan Bolser dan.bolser at gmail.com
Tue Jul 13 13:15:02 EDT 2010


Hi,

When one sequence exists in the context of another larger sequence
(with a precise start, end and strand), what is the easiest way to
convert coordinates between the two sequences?

I'm guessing there is an object I can load with the appropriate
information with a conversion method? However, I'm stuck for details.

I have implemented sub-sequences as features, but I'm not sure what to do next.

Thanks for any hints,
Dan.


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