[Bioperl-l] Coordinate converter?

Jason Stajich jason at bioperl.org
Tue Jul 13 18:41:24 EDT 2010


Bio::Coordinate::Pair?


Dan Bolser wrote, On 7/13/10 10:15 AM:
> Hi,
>
> When one sequence exists in the context of another larger sequence
> (with a precise start, end and strand), what is the easiest way to
> convert coordinates between the two sequences?
>
> I'm guessing there is an object I can load with the appropriate
> information with a conversion method? However, I'm stuck for details.
>
> I have implemented sub-sequences as features, but I'm not sure what to do next.
>
> Thanks for any hints,
> Dan.
>
>
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