[Bioperl-l] Accessing karyotype data from Ensembl

Chris Fields cjfields at illinois.edu
Wed Jul 21 17:43:32 EDT 2010

You should contact the ensembl mail list for ensembl-related questions; this lies outside the bioperl domain.


On Jul 20, 2010, at 6:46 PM, Ycart wrote:

> Hi,
> I am trying to figure out the correct syntax to access the karyotype data from
> the Ensembl database. I need to use the start and end base pair coordinates for
> the karyotype bands in a separate program, which means I need to be able to use
> that data, not just view it. 
> I'm thinking that it will be like getting slices as described in the Core API
> Tutorial, but with some other word than 'Slice' in:
> my $slice_adaptor = $registry->get_adaptor( 'Human', 'Core', 'Slice' );
> Any ideas on how to do this under the current API?
> -Tracy
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