[Bioperl-l] bioperl wiki oddity for 'installing bioperl in unix'

Pablo Marin-Garcia pg4 at sanger.ac.uk
Fri Jul 23 13:33:10 EDT 2010


On Fri, 23 Jul 2010, Chris Fields wrote:

> http://github.com/cjfields/bioperl6
oh, very nice!.

> http://github.com/cjfields/biome

one of my to-do things for my holidays is to git clone it and star to play with 
it. I have several mOOse modules for GWAS that I am going to release soon but I 
would like to accomodate them first to the bioperl look and feel.

> :)
>
> chris
>
> On Jul 23, 2010, at 12:17 PM, Pablo Marin-Garcia wrote:
>
>>
>> extending a bit more this off topic thread about nice perl modern tools, just mention  for the adventurous that you would be able, next month, to test porting some bioperl to perl6 if you wish:
>>
>> http://pablomarin-garcia.blogspot.com/2010/07/perl-rakudo-start-will-be-available-at.html
>>
>> I have not tried the inline-Rakudo yet but seems a nice way of start to test perl6 inside your perl5.
>>
>>
>> Have a good weekend
>>
>>  -Pablo
>>
>>
>>
>> On Fri, 23 Jul 2010, Chris Fields wrote:
>>
>>>
>>> On Jul 23, 2010, at 11:52 AM, Pablo Marin-Garcia wrote:
>>>
>>>> On Fri, 23 Jul 2010, Dave Messina wrote:
>>>>
>>>>> Thanks for that addition to the wiki, Pablo! Much appreciated.
>>>>>
>>>>> I did not know about local::lib.
>>>>>
>>>>
>>>> [This is a bit off-topic but probably useful for core developers]
>>>> Then probably you don't know about
>>>>
>>>> App::perlbrew
>>>>
>>>> Very useful when you want to test your api in different perl versions, or now that perl is releasing new versions more frequently you can test the latest one, easily.
>>> ...
>>>
>>> yes, just started using this myself.
>>>
>>> Re: local::lib, I don't use it much, but I have found perl 5.12 is a bit easier when installing modules locally.  In fact, will probably install perl and modules locally from now on instead of going through the hassle of dealing with sysadmins.
>>>
>>> chris
>>
>>
>> -----
>>
>>  Pablo Marin-Garcia
>>
>>
>>
>> --
>> The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.
>
>


-----

   Pablo Marin-Garcia



-- 
 The Wellcome Trust Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE. 


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