[Bioperl-l] Bio::Biblio::IO copyright parsing

Yulia Bushmanova y-bushmanova at northwestern.edu
Fri Jul 23 14:54:19 EDT 2010


Sorry, first email had wrong file attached

Yulia

Yulia Bushmanova wrote:
> Hi All,
>
> I was trying to parse Pubmed xml with Bio::Biblio::IO (v.1.006001) and 
> got following error:
>
> not well-formed (invalid token) at line 32, column 48, byte 3095 at 
> /usr/lib/perl5/XML/Parser.pm line 187
>
> Looks like parser complains on the copyright sign, if I manually 
> remove it from file parsing goes fine. XML::Parser is version 2.36.
>
> Any ideas on how to deal with this error?
>
> Thanks in advance,
> Yulia

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