[Bioperl-l] [bug 3120] Bio::DB::SeqFeature::Store::DBI::SQLite + bp_seqfeature_gff3.PLS = unhappy?

John Anderson genehack at genehack.org
Sun Jul 25 14:36:07 EDT 2010


On Jul 25, 2010, at 2:06 PM, John Anderson wrote:
> Second, when called on a database that's been built with '$db->no_blobs(1)', the output 
[ snip ]

I just pushed a second changeset to <http://github.com/genehack/bioperl-live/tree/topic/bug-3120> that I believe fixes this problem. It passes all the tests that are run when Build.PL is configured with the "standard" module list, and it generates much more useful output when run through the scripts in Jay's bug report. 

I did not add any tests for the functionality I added, because I'm not sure where the appropriate place to add them is. Feedback on that would be appreciated -- I think it should be possible to turn the test case Jay appended to the original bug report into a rudimentary test of this change.

(A pull request for this change has been sent to the 'bioperl' user on Github.)

thanks,
john.






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