[Bioperl-l] bp_genbank2gff3.pl error on last line ("//")

Peter biopython at maubp.freeserve.co.uk
Sun Jul 25 17:10:30 EDT 2010


On Sun, Jul 25, 2010 at 8:52 PM, David Breimann
<david.breimann at gmail.com> wrote:
> Thank you guys. I'm quite new to all this github stuff, so in order to view
> to use to updated version should I first update my clone of bioperl-live
> (git pull?) then go through the whole build and install again?
>
> Second, I have just noticed that bp_genbank2gff3.pl returns an error when
> given a circular genome with a feature that spans the "end" of the genome
> (e.g., assume the genome size is 1000np and a feature spans
> join(900..1000,1..100).

The GFF3 spec has recently been updated to cover circular
genomes explicitly - this script probably needs updating in light
of this.

Peter


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