[Bioperl-l] Inquiry on OrthoMCL
Mark A. Jensen
maj at fortinbras.us
Mon Jul 26 09:18:56 EDT 2010
Forwarding to the list for more help for you. You may want to look at the POD
for Bio::Tools::Run::WrapperBase::CommandExts (in the bioperl-live distribution)
in the section "DEVELOPER INTERFACE" for a tutorial on how to use this module to
create an OrthoMCL wrapper. This might be more technical than you want. Maybe a
dev on the list would be interested in creating a wrapper using CommandExts.
----- Original Message -----
From: "Benard Kulohoma" <B.Kulohoma at liverpool.ac.uk>
To: <maj at fortinbras.us>
Sent: Wednesday, July 21, 2010 10:58 AM
I just read your bioperl resource on BWA (and here:
http://bioperl.org/pipermail/bioperl-l/2009-July/030563.html) and it was most
helpful. Do you have any idea of how I could use Bioperl to implement OrthoMCL
of several bacterial genomes. I would like to find some membrane proteins.
PS: I am sorry for spaming/inquiring!! :)
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