[Bioperl-l] Inquiry on OrthoMCL

Mark A. Jensen maj at fortinbras.us
Mon Jul 26 09:18:56 EDT 2010


Hi Benard,
Forwarding to the list for more help for you. You may want to look at the POD 
for Bio::Tools::Run::WrapperBase::CommandExts (in the bioperl-live distribution) 
in the section "DEVELOPER INTERFACE" for a tutorial on how to use this module to 
create an OrthoMCL wrapper. This might be more technical than you want. Maybe a 
dev on the list would be interested in creating a wrapper using CommandExts.
cheers, MAJ
----- Original Message ----- 
From: "Benard Kulohoma" <B.Kulohoma at liverpool.ac.uk>
To: <maj at fortinbras.us>
Sent: Wednesday, July 21, 2010 10:58 AM
Subject: Inquiry


Hi Mark,

I just read your bioperl resource on BWA (and here: 
http://bioperl.org/pipermail/bioperl-l/2009-July/030563.html) and it was most 
helpful. Do you have any idea of how I could use Bioperl to implement OrthoMCL 
of several bacterial genomes. I would like to find some membrane proteins.

Many thanks,

Benard

PS: I am sorry for spaming/inquiring!! :)

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