[Bioperl-l] What implements SeqFeatureI?

Scott Cain scott at scottcain.net
Tue Jul 27 09:45:25 EDT 2010


Hi Dan,

You might find the deobfuscator helpful:

  http://bioperl.org/cgi-bin/deob_interface.cgi

Scott


On Tue, Jul 27, 2010 at 4:53 AM, Dan Bolser <dan.bolser at gmail.com> wrote:
> On 26 July 2010 16:35, Scott Cain <scott at scottcain.net> wrote:
>> Hi Dan,
>>
>> I think there are probably several BioPerl classes that implement
>> Bio::SeqFeatureI, like Bio::SeqFeature::Generic.  What are you looking
>> for?
>
> A way to find what implements what... something like javadoc for bp.
>
> Really I'm looking for a nice 'ontology' of SeqFeatures.
>
> I was thinking that Contig.pm should implement Bio::SeqFeatureI.
>
>
>> Scott
>>
>>
>> On Sun, Jul 25, 2010 at 12:40 PM, Dan Bolser <dan.bolser at gmail.com> wrote:
>>> Which objects implement SeqFeatureI, and how should I find that info?
>>>
>>> Sorry for the gratuitous noobs.
>>>
>>> Cheers,
>>> Dan.
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>
>>
>>
>>
>> --
>> ------------------------------------------------------------------------
>> Scott Cain, Ph. D.                                   scott at scottcain dot net
>> GMOD Coordinator (http://gmod.org/)                     216-392-3087
>> Ontario Institute for Cancer Research
>>
>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research



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