[Bioperl-l] How to Obtain Nucleotide Sequence from SeqIO::fastq

Alan Twaddle twaddlac at gmail.com
Tue Jul 27 10:10:30 EDT 2010


Hello,

     I am curious as to how I am supposed to use SeqIO::fastq to read
in a fastq file and then obtain the nucleotide sequence from that. I
noticed that SeqIO::fastq returns a Seq::Quality object but I haven't
seen a method within that module that returns the nucleotide sequence.
Please, let me know if you have any suggestions!

Thank you very much!!

-- 

Alan Twaddle, B.S.
MUC class of 2010


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