[Bioperl-l] How to extract corresponding human genome sequence using mouse genome coordination

Chris Fields cjfields at illinois.edu
Tue Jul 27 12:55:26 EDT 2010


Look at the ensembl API for this (I think compara in particular).

chris

On Jul 25, 2010, at 8:56 AM, ncRNA wrote:

> Hi all,
> 
> I am new to this forum and bioperl. I have a list of mouse genomic
> regions and would like to get the "corresponding" human genomic
> sequences, which can be seen from the comparative genomics tracks in
> the UCSC genome browser. Does anyone have any clue on how to realize
> this?
> 
> Thanks in advance,
> ncRNA
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