[Bioperl-l] What implements SeqFeatureI?

Dan Bolser dan.bolser at gmail.com
Wed Jul 28 05:59:39 EDT 2010


On 27 July 2010 14:45, Scott Cain <scott at scottcain.net> wrote:
> Hi Dan,
>
> You might find the deobfuscator helpful:
>
>  http://bioperl.org/cgi-bin/deob_interface.cgi

I've tried to use that, but I don't understand how to get it to list
the objects that implement a certain interface.



> Scott
>
>
> On Tue, Jul 27, 2010 at 4:53 AM, Dan Bolser <dan.bolser at gmail.com> wrote:
>> On 26 July 2010 16:35, Scott Cain <scott at scottcain.net> wrote:
>>> Hi Dan,
>>>
>>> I think there are probably several BioPerl classes that implement
>>> Bio::SeqFeatureI, like Bio::SeqFeature::Generic.  What are you looking
>>> for?
>>
>> A way to find what implements what... something like javadoc for bp.
>>
>> Really I'm looking for a nice 'ontology' of SeqFeatures.
>>
>> I was thinking that Contig.pm should implement Bio::SeqFeatureI.
>>
>>
>>> Scott
>>>
>>>
>>> On Sun, Jul 25, 2010 at 12:40 PM, Dan Bolser <dan.bolser at gmail.com> wrote:
>>>> Which objects implement SeqFeatureI, and how should I find that info?
>>>>
>>>> Sorry for the gratuitous noobs.
>>>>
>>>> Cheers,
>>>> Dan.
>>>> _______________________________________________
>>>> Bioperl-l mailing list
>>>> Bioperl-l at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>>>
>>>
>>>
>>>
>>> --
>>> ------------------------------------------------------------------------
>>> Scott Cain, Ph. D.                                   scott at scottcain dot net
>>> GMOD Coordinator (http://gmod.org/)                     216-392-3087
>>> Ontario Institute for Cancer Research
>>>
>>
>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
>



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