[Bioperl-l] What implements SeqFeatureI?

Chris Fields cjfields at illinois.edu
Thu Jul 29 09:15:11 EDT 2010


On Jul 29, 2010, at 3:08 AM, Dan Bolser wrote:

> On 28 July 2010 14:33, Chris Fields <cjfields at illinois.edu> wrote:
>> On Jul 28, 2010, at 4:59 AM, Dan Bolser wrote:
>> 
>>> On 27 July 2010 14:45, Scott Cain <scott at scottcain.net> wrote:
>>>> Hi Dan,
>>>> 
>>>> You might find the deobfuscator helpful:
>>>> 
>>>>  http://bioperl.org/cgi-bin/deob_interface.cgi
>>> 
>>> I've tried to use that, but I don't understand how to get it to list
>>> the objects that implement a certain interface.
>> 
>> The only way to do this is to introspect every bioperl class.  Pprobably recursively parse through all modules looking for package statements, run an eval to load and check the class.
> 
> OK, so at least I'm not being totally dumb when I can't find this info
> easily... I'll see if I can script it and add the results to the wiki.
> 
> 
>> chris

Or, better yet, add it to the /scripts or /examples directory for bioperl-live.  Code on the wiki can tend to get lost unless it's in a very accessible place.

chris


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