[Bioperl-l] bioperl support for running blast locally

Florent Angly florent.angly at gmail.com
Sat Jun 5 18:55:56 EDT 2010

To run BLAST locally, see  bioperl-run  / lib  / Bio  / Tools  / Run  / 
Then to parse the results, you can read this: 

On 06/06/2010 07:28 AM, Peng Yu wrote:
> There is a module to run blast remotely
> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and
> I think that it makes more sense for me to run blast locally. Is there
> a way to let bioperl parse the output from my local command line
> blast?

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