[Bioperl-l] Res: How to do a megablast with Bioperl?
David.Messina at sbc.su.se
Mon Jun 7 13:58:12 EDT 2010
Please keep the list on the Cc so everyone can follow along.
> Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl?
Sorry, I read your last post too fast.
You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus:
Note that in blastplus, megablast is the default -task
PS — I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated?
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