[Bioperl-l] Res: Res: How to do a megablast with Bioperl?

Rondon Neto rondonbio at yahoo.com.br
Mon Jun 7 14:01:23 EDT 2010

Thank you!

De: Dave Messina <David.Messina at sbc.su.se>
Para: Rondon Neto <rondonbio at yahoo.com.br>
Cc: BioPerl List <bioperl-l at lists.open-bio.org>
Enviadas: Segunda-feira, 7 de Junho de 2010 14:58:12
Assunto: Re: Res: [Bioperl-l] How to do a megablast with Bioperl?

Hi Rondon,

Please keep the list on the Cc so everyone can follow along.

Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl?

Sorry, I read your last post too fast.

You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus:



Note that in blastplus, megablast is the default -task


PS — I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated?


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