[Bioperl-l] Get variation included in genbank file
David.Messina at sbc.su.se
Mon Jun 7 17:18:03 EDT 2010
> Does any know how to include variation(dbSNP) in the genbank file format
> automatically using NM_ accession number using bioperl?
I'm not sure I understand the question.
As far as I know, Genbank records don't include SNP information. See for example the record for human p53 (which has SNPs):
I think though you should be able to get to a dbSNP record if you have a NM_ accession number using the BioPerl interface to NCBI's EUtilities.
More information here:
If that's not what you're after, could you clarify what you want to do?
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