[Bioperl-l] Get variation included in genbank file
jessica.sun at gmail.com
Wed Jun 9 12:28:58 EDT 2010
I would need to automatically get a gbk file like this with
:Variation(dbSNP) included and correct mRNA/CDS regions, can it be done
I am not sure about it.
On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina <David.Messina at sbc.su.se>wrote:
> Hi Jessica,
> > Does any know how to include variation(dbSNP) in the genbank file format
> > automatically using NM_ accession number using bioperl?
> I'm not sure I understand the question.
> As far as I know, Genbank records don't include SNP information. See for
> example the record for human p53 (which has SNPs):
> I think though you should be able to get to a dbSNP record if you have a
> NM_ accession number using the BioPerl interface to NCBI's EUtilities.
> More information here:
> If that's not what you're after, could you clarify what you want to do?
Jessica Jingping Sun
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