[Bioperl-l] Retrieving upstream & downstream sequences

Stefan Kirov stefan.kirov at bms.com
Tue Jun 15 10:39:48 EDT 2010

Try the ensembl API


On 6/14/2010 8:48 AM, Ross KK Leung wrote:
> If I have an accession number for an mRNA/cDNA/gene (e.g.
> http://www.ncbi.nlm.nih.gov/nuccore/51980295), I find sometimes if I
> retrieve the genbank file and parse /dbxref then I may sometimes be able to
> get some extra information but then the page is not readily usable, e.g.
> http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_repo
> rt&list_uids=24377
> is there any way to automatically retrieve its upstream&  downstream genomic
> sequence (e.g. 500bp)?
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

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