[Bioperl-l] Any module for chromosome region analysis ?

Jason Stajich jason at bioperl.org
Mon Mar 1 20:51:02 EST 2010

Like the ensembl perl API?

Robert Bradbury wrote:
> I'm not sure if the species being dealt with are "common", but it would seem
> to me that a logical addition to bioperl would be an extension that took a
> genome location (or locations) and interfaced one into a browser of those
> regions in external databases (e.g. UCSC Genome Browser, Ensemble, etc.).
> The only cases where that wouldn't work is if one is dealing with novel
> species that aren't in the databases yet.
> Robert
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