[Bioperl-l] bootstrap values in cladogram
alex at bioinf.uni-leipzig.de
Tue Mar 9 13:00:01 EST 2010
using Bioperl 1.6.1, I'm reading a newick tree with branch lengths and
bootstrap values and try to plot the tree as cladogram. But somehow I
cannot print the bootstrap values.
my $trees = Bio::TreeIO->new( -file => "test.nwk",
-format => 'newick');
my $tree = $trees->next_tree();
my $out = Bio::Tree::Draw::Cladogram->new( -bootstrap => 1,
-tree => $tree,
-compact => 0);
$out->print(-file => "test.eps");
I already tried it by copying the bootstrap values into the ids of the
internal nodes - nothing. Any suggestions?
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