[Bioperl-l] unambiguous assembly of fastq reads into fastq sequences combining q-scores
avilella at gmail.com
Wed Mar 10 03:55:09 EST 2010
I would like to know if anyone knows of a script or method in bioperl
to do an unambiguous assembly of fastq sequences, combining the q-scores to
give assembled fastq sequences as the output.
By unambiguous I mean something like what abyss would produce with this options:
ABYSS -k$k -b0 -t0 -e0 -c0
but giving assembled fastq sequences with combined q-scores as output
instead of simple
fasta assembled sequences.
Thanks in advance
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