[Bioperl-l] Next Gen Formats

Ryan Golhar golharam at umdnj.edu
Mon Mar 8 16:06:11 EST 2010


Does Bioperl support color-space sequences, or FASTA formatted quality 
value files?

ABI's Solid platform generates a number of files, two of which are 
fairly important (at the moment):

1)  .csfasta

Color-space sequences in FASTA format

2) .qual

Quality values of each color call, also in FASTA format.

I didn't see (at quick glance) support for this in Bioperl, but maybe 
someone can point me in the right direction?

Ryan
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