[Bioperl-l] Next Gen Formats

Chris Fields cjfields at illinois.edu
Thu Mar 11 12:27:35 EST 2010


Not that I know of, though we are certainly receptive to anyone wanting to work this into the current code.

chris

On Mar 8, 2010, at 3:06 PM, Ryan Golhar wrote:

> Does Bioperl support color-space sequences, or FASTA formatted quality value files?
> 
> ABI's Solid platform generates a number of files, two of which are fairly important (at the moment):
> 
> 1)  .csfasta
> 
> Color-space sequences in FASTA format
> 
> 2) .qual
> 
> Quality values of each color call, also in FASTA format.
> 
> I didn't see (at quick glance) support for this in Bioperl, but maybe someone can point me in the right direction?
> 
> Ryan
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