[Bioperl-l] using Bio::SeqFeature::Tools::Unflattener

Jason Stajich jason at bioperl.org
Mon Mar 22 16:33:51 EDT 2010

you can try this but it is a bit of an involved script because it is 
setup for dealing with multiple genomes in multiple folders so you might 
want to simplify it.

But I thought the perldoc was a good starting point - have you tried it

Generally I do:
  GENBANK -> GFF3  --> genbank_gbk2gff3_unflatten.pl
  GFF3 -> {CDS,PEP,GENE}  --> 
(or equivalent)


Jessica Sun wrote, On 3/22/10 11:48 AM:
> Does any know how to get CDS of the corresponding mRNA accession(NM_) using
> this function?
> *Bio::SeqFeature::Tools::Unflattener
> many thanks in advance.
> *

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