[Bioperl-l] [Gmod-schema] bp_genbank2gff3.pl in bioperl-live: why map CDS to gene_component_region?

Leighton Pritchard lpritc at scri.ac.uk
Thu Mar 25 07:20:01 EDT 2010


Nathan's been in touch to ask exactly what the command-line was that I was
using, and this was missing from the thread so, for info:

bp_genbank2gff3.pl --noCDS NC_000913.gbk


bp_genbank2gff3.pl --CDS NC_000913.gbk

With occasional absolute paths to the input sequence.


On 23/03/2010 Tuesday, March 23, 18:18, "Scott Cain" <scott at scottcain.net>

> Hi Leighton,
> I wonder if this is a change stemming from Nathan's work on this
> script.  Nathan?
> Scott

Dr Leighton Pritchard MRSC
D131, Plant Pathology Programme, SCRI
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