[Bioperl-l] Running Smith Waterman alignments in BioPerl

Adam Witney awitney at sgul.ac.uk
Fri Mar 26 11:20:36 EDT 2010

Is the bioperl-ext package still being developed? I ask because i am looking at running some SW alignments using the pSW module, but the simple example in the pod gives the error 

"The C-compiled engine for Smith Waterman alignments (Bio::Ext::Align) has not been installed.
 Please read the install the bioperl-ext package"

even though i did compile and install the Bio::Ext::Align package

If not using the pSW module, what do other people use for this?



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