March 2010 Archives by thread

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Starting: Mon Mar 1 00:02:12 EST 2010
Ending: Wed Mar 31 17:28:59 EDT 2010
Messages: 256

• [Bioperl-l] use threads to get seq file error.   Zhang_tao
• [Bioperl-l] use threads to get seq file error.   forrest
  • [Bioperl-l] use threads to get seq file error.   Chris Fields
• [Bioperl-l] Loading NCBI/GenBank bacteria into CHADO: Chromosome/Plasmid gene name conflicts   Leighton Pritchard
  • [Bioperl-l] [Gmod-schema] Loading NCBI/GenBank bacteria into CHADO: Chromosome/Plasmid gene name conflicts   Scott Cain
    • [Bioperl-l] [Gmod-schema] Loading NCBI/GenBank bacteria into CHADO: Chromosome/Plasmid gene name conflicts   Leighton Pritchard
      • [Bioperl-l] [Gmod-schema] Loading NCBI/GenBank bacteria into CHADO: Chromosome/Plasmid gene name conflicts   Scott Cain
• [Bioperl-l] StandAloneBlastPlus   Janine Arloth
  • [Bioperl-l] StandAloneBlastPlus   Mark A. Jensen
    • [Bioperl-l] StandAloneBlastPlus   Smithies, Russell
• [Bioperl-l] Alignment from blast report   Paolo Pavan
  • [Bioperl-l] Alignment from blast report   Chris Fields
    • [Bioperl-l] Alignment from blast report   Paolo Pavan
      • [Bioperl-l] Alignment from blast report   Mark A. Jensen
      • [Bioperl-l] Alignment from blast report   Paolo Pavan
      • [Bioperl-l] Alignment from blast report   Mark A. Jensen
      • [Bioperl-l] Alignment from blast report   Paolo Pavan
• [Bioperl-l] Any module for chromosome region analysis ?   Jason Stajich
• [Bioperl-l] how to convert a txt file to a bed file?   Zhenyu Shen
  • [Bioperl-l] how to convert a txt file to a bed file?   Sean Davis
• [Bioperl-l] call for project ideas - Google Summer of Code   Robert Buels
• [Bioperl-l] Next-gen modules   fadista
• [Bioperl-l] Installing bioperl on windows   Mark A. Jensen
• [Bioperl-l] bioperl job   Mark A. Jensen
• [Bioperl-l] Bio::DB::RefSeq and NC_007092   armendarez77 at hotmail.com
  • [Bioperl-l] Bio::DB::RefSeq and NC_007092   Smithies, Russell
    • [Bioperl-l] Bio::DB::RefSeq and NC_007092   armendarez77 at hotmail.com
• [Bioperl-l] StandAloneBlastPlus   Janine Arloth
  • [Bioperl-l] StandAloneBlastPlus   Brian Osborne
  • [Bioperl-l] StandAloneBlastPlus   Mark A. Jensen
• [Bioperl-l] Bio::DB::CUTG problem   Csaba Ortutay
  • [Bioperl-l] Bio::DB::CUTG problem   Mark A. Jensen
• [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Jason Stajich
  • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Dave Messina
  • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Chris Fields
    • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Chris Fields
• [Bioperl-l] call for project ideas - Google Summer of Code   Robert Buels
• [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Josef Anrather
  • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Mark A. Jensen
  • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Dave Messina
    • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Robert Bradbury
      • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Peter
      • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Dave Messina
      • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Peter
      • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Chris Fields
      • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Chris Fields
      • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Josef Anrather
      • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Chris Fields
      • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Robert Bradbury
      • [Bioperl-l] [Fwd: Enquiry about Remoteblast.pm]   Roy Chaudhuri
• [Bioperl-l] distances between leaf nodes   Jeffrey Detras
  • [Bioperl-l] distances between leaf nodes   Jason Stajich
  • [Bioperl-l] distances between leaf nodes   Mark A. Jensen
• [Bioperl-l] Bio::SearchIO   Janine Arloth
  • [Bioperl-l] Bio::SearchIO   Juan Jovel
    • [Bioperl-l] How to trim 3' adaptors from solexa reads?   Juan Jovel
      • [Bioperl-l] How to trim 3' adaptors from solexa reads?   Noll, Aaron
      • [Bioperl-l] How to trim 3' adaptors from solexa reads?   michael watson (IAH-C)
      • [Bioperl-l] How to trim 3' adaptors from solexa reads?   Florent Angly
  • [Bioperl-l] Bio::SearchIO   Jason Stajich
• [Bioperl-l] Accession Nuber to Genbank Record (Isolation Source)   shalabh sharma
  • [Bioperl-l] Accession Nuber to Genbank Record (Isolation Source)   Brian Osborne
• [Bioperl-l] Accession Nuber to Genbank Record (Isolation Source)   shalabh sharma
  • [Bioperl-l] Accession Nuber to Genbank Record (Isolation Source)   Brian Osborne
    • [Bioperl-l] Accession Nuber to Genbank Record (Isolation Source)   Chris Fields
      • [Bioperl-l] Accession Nuber to Genbank Record (Isolation Source)   shalabh sharma
      • [Bioperl-l] Accession Nuber to Genbank Record (Isolation Source)   shalabh sharma
• [Bioperl-l] insertion code in pdb parser   =?gb2312?B?1MYgus4=?=
• [Bioperl-l] remoteblast   Roopa Raghuveer
  • [Bioperl-l] remoteblast   Chris Fields
• [Bioperl-l] Installing BioPerl   Ernesto George Lujan
  • [Bioperl-l] Installing BioPerl   Dave Messina
• [Bioperl-l] Bioperl-run malformed svndiff   Ben Bimber
• [Bioperl-l] Problem with PAML/Codeml wrapper   Alexander Donath
  • [Bioperl-l] Problem with PAML/Codeml wrapper   Dave Messina
    • [Bioperl-l] Problem with PAML/Codeml wrapper   Alexander Donath
• [Bioperl-l] Next Gen Formats   Ryan Golhar
  • [Bioperl-l] Next Gen Formats   Chris Fields
  • [Bioperl-l] Next Gen Formats   Peter
    • [Bioperl-l] Next Gen Formats   Ryan Golhar
      • [Bioperl-l] Next Gen Formats   Chris Fields
      • [Bioperl-l] Next Gen Formats   Peter
      • [Bioperl-l] Next Gen Formats   Chris Fields
      • [Bioperl-l] Next Gen Formats   Ryan Golhar
• [Bioperl-l] bootstrap values in cladogram   Alexander Donath
  • [Bioperl-l] bootstrap values in cladogram   Jason Stajich
    • [Bioperl-l] bootstrap values in cladogram   Alexander Donath
• [Bioperl-l] How to retrieve the Gene Info from the hit genomes start and end positions in the blast table report?   Bhakti Dwivedi
  • [Bioperl-l] How to retrieve the Gene Info from the hit genomes start and end positions in the blast table report?   Dave Messina
• [Bioperl-l] Bio::Index::Blast bug   Till Bayer
  • [Bioperl-l] Bio::Index::Blast bug   Peter
    • [Bioperl-l] Bio::Index::Blast bug   Chris Fields
      • [Bioperl-l] Bio::Index::Blast bug   Peter
      • [Bioperl-l] Bio::Index::Blast bug   Chris Fields
• [Bioperl-l] unambiguous assembly of fastq reads into fastq sequences combining q-scores   Albert Vilella
  • [Bioperl-l] unambiguous assembly of fastq reads into fastq sequences combining q-scores   Sean Davis
    • [Bioperl-l] unambiguous assembly of fastq reads into fastq sequences combining q-scores   Albert Vilella
• [Bioperl-l] [PATCH] Fix infinite loop in EMBL writer.   Adam Sjøgren
  • [Bioperl-l] Fix infinite loop in EMBL writer.   Adam Sjøgren
• [Bioperl-l] Introducing SearchIOified HMMER v3 parser   Thomas Sharpton
  • [Bioperl-l] Introducing SearchIOified HMMER v3 parser   Chris Fields
  • [Bioperl-l] Introducing SearchIOified HMMER v3 parser   Dave Messina
• [Bioperl-l] call for help - BioPerl GSoC wiki page   Robert Buels
• [Bioperl-l] Can protein glyph tracks interfere with other tracks?   Nathan Liles
  • [Bioperl-l] Can protein glyph tracks interfere with other tracks?   Scott Cain
• [Bioperl-l] PSI-BLAST uncommon result   Luis M Rodriguez-R
  • [Bioperl-l] PSI-BLAST uncommon result   Chris Fields
• [Bioperl-l] bootstrap values in cladogram   Jason Stajich
  • [Bioperl-l] bootstrap values in cladogram   Chris Fields
• [Bioperl-l] GFF to GTF converter   Alexander Kanapin
  • [Bioperl-l] GFF to GTF converter   Chris Fields
• [Bioperl-l] Bio-SCF from CPAN == error installation   Jessica Sun
  • [Bioperl-l] Bio-SCF from CPAN == error installation   Chris Fields
  • [Bioperl-l] Bio-SCF from CPAN == error installation   Scott Cain
  • [Bioperl-l] Bio-SCF from CPAN == error installation   Robert Buels
    • [Bioperl-l] Bio-SCF from CPAN == error installation   Jessica Sun
      • [Bioperl-l] Bio-SCF from CPAN == error installation   Scott Cain
• [Bioperl-l] Next-gen modules   Albert Vilella
• [Bioperl-l] Next Gen Formats   Peter
• [Bioperl-l] Next Gen Formats   Ryan Golhar
  • [Bioperl-l] Next Gen Formats   Chris Fields
    • [Bioperl-l] Next Gen Formats   Phillip San Miguel
• [Bioperl-l] Bio::SearchIO   Jason Stajich
• [Bioperl-l] remoteblast   Roopa Raghuveer
  • [Bioperl-l] remoteblast   Mark A. Jensen
  • [Bioperl-l] remoteblast   Brian Osborne
• [Bioperl-l] RefSeq   Jessica Sun
  • [Bioperl-l] Re: RefSeq   Siddhartha Basu
    • [Bioperl-l] RefSeq   Jessica Sun
• [Bioperl-l] comparing fasta sequences in multiple files   robby jhones
  • [Bioperl-l] comparing fasta sequences in multiple files   Sean Davis
• [Bioperl-l] comparing fasta sequences in multiple files   Sean Davis
• [Bioperl-l] SearchIO, StandAloneBlastPlus   Janine Arloth
  • [Bioperl-l] SearchIO, StandAloneBlastPlus   Chris Fields
  • [Bioperl-l] SearchIO, StandAloneBlastPlus   Smithies, Russell
    • [Bioperl-l] SearchIO, StandAloneBlastPlus   michael watson (IAH-C)
      • [Bioperl-l] SearchIO, StandAloneBlastPlus   Smithies, Russell
• [Bioperl-l] मेरी Facebook प्रोफ़ाइल देखें   Animesh Sharma
• [Bioperl-l] Taxonomy report   kiekyon.huang at gmail.com
  • [Bioperl-l] Taxonomy report   Chris Fields
• [Bioperl-l] getting strand from Bio::Align::AlignI ??   Jason Stajich
• [Bioperl-l] Bioperl SVNconnection problem   Christopher Fields
  • [Bioperl-l] Bioperl SVNconnection problem   robfsouza
    • [Bioperl-l] Bioperl SVNconnection problem   Adam Sjøgren
• [Bioperl-l] [OT] Job opportunity: Training coordinator and Bioinformatics Project Manager   Hilmar Lapp
• [Bioperl-l] What's to depend on for BioPerl-run version check   George Hartzell
  • [Bioperl-l] What's to depend on for BioPerl-run version check   Mark A. Jensen
    • [Bioperl-l] What's to depend on for BioPerl-run version check   Chris Fields
• [Bioperl-l] SearchIO, StandAloneBlastPlus   Smithies, Russell
• [Bioperl-l] Bio::DB::RefSeq and iPrism Web Filter   armendarez77 at hotmail.com
  • [Bioperl-l] Bio::DB::RefSeq and iPrism Web Filter   Chris Fields
• [Bioperl-l] Google Summer of Code is *ON* for OBF projects!   Robert Buels
• [Bioperl-l] GSoC-2010 & the semantic web   Luis M Rodriguez-R
  • [Bioperl-l] GSoC-2010 & the semantic web   Peter
  • [Bioperl-l] GSoC-2010 & the semantic web   Chris Fields
• [Bioperl-l] automation of translation based on alignment   Ross KK Leung
  • [Bioperl-l] automation of translation based on alignment   Florent Angly
• [Bioperl-l] BlastPlus -Match/Mismatch scores + Gap costs   Janine Arloth
  • [Bioperl-l] BlastPlus -Match/Mismatch scores + Gap costs   Mark A. Jensen
  • [Bioperl-l] BlastPlus usage inquiry   Ross KK Leung
• [Bioperl-l] BlastPlus Masker   Nils Müller
  • [Bioperl-l] BlastPlus Masker   Mark A. Jensen
• [Bioperl-l] automation of translation based on alignment   Florent Angly
  • [Bioperl-l] automation of translation based on alignment   Ross KK Leung
    • [Bioperl-l] automation of translation based on alignment   Chris Fields
      • [Bioperl-l] automation of translation based on alignment   Ross KK Leung
      • [Bioperl-l] automation of translation based on alignment   Chris Fields
      • [Bioperl-l] automation of translation based on alignment   Ross KK Leung
      • [Bioperl-l] automation of translation based on alignment   Chris Fields
• [Bioperl-l] using Bio::SeqFeature::Tools::Unflattener   Jessica Sun
  • [Bioperl-l] using Bio::SeqFeature::Tools::Unflattener   Jason Stajich
• [Bioperl-l] Bio::DB::SeqFeature spliced_seq()   Chris Fields
  • [Bioperl-l] Bio::DB::SeqFeature spliced_seq()   Jason Stajich
    • [Bioperl-l] [Gmod-gbrowse] Bio::DB::SeqFeature spliced_seq()   Chris Fields
• [Bioperl-l] G.U.I for bioperl on XP and possibly Vista   Charles Embry
  • [Bioperl-l] G.U.I for bioperl on XP and possibly Vista   Smithies, Russell
  • [Bioperl-l] G.U.I for bioperl on XP and possibly Vista   Robert Buels
    • [Bioperl-l] G.U.I for bioperl on XP and possibly Vista   Smithies, Russell
• [Bioperl-l] automation of translation based on alignment   Chris Larsen
  • [Bioperl-l] automation of translation based on alignment   Ross KK Leung
    • [Bioperl-l] automation of translation based on alignment   Chris Fields
      • [Bioperl-l] automation of translation based on alignment   Ross KK Leung
      • [Bioperl-l] automation of translation based on alignment   Chris Fields
  • [Bioperl-l] automation of translation based on alignment   Chris Fields
  • [Bioperl-l] automation of translation based on alignment   Peter
• [Bioperl-l] Fwd: [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO   Razi Khaja
  • [Bioperl-l] Fwd: [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO   Smithies, Russell
    • [Bioperl-l] Fwd: [Bioperl-guts-l] [Bug 3031] Unable to parse algorithm_reference from BLAST reports using Bio::SearchIO   Razi Khaja
• [Bioperl-l] Xyplot and multiple lines plots   Emanuele Osimo
• [Bioperl-l] G.U.I for bioperl on XP and possibly Vista   Jean-Marc Frigerio INRA
  • [Bioperl-l] Re : G.U.I for bioperl on XP and possibly Vista   djibrilo
• [Bioperl-l] bp_genbank2gff3.pl in bioperl-live: why map CDS to gene_component_region?   Leighton Pritchard
  • [Bioperl-l] [Gmod-schema] bp_genbank2gff3.pl in bioperl-live: why map CDS to gene_component_region?   Scott Cain
    • [Bioperl-l] [Gmod-schema] bp_genbank2gff3.pl in bioperl-live: why map CDS to gene_component_region?   Leighton Pritchard
      • [Bioperl-l] [Gmod-schema] bp_genbank2gff3.pl in bioperl-live: why map CDS to gene_component_region?   Chris Fields
    • [Bioperl-l] [Gmod-schema] bp_genbank2gff3.pl in bioperl-live: why map CDS to gene_component_region?   Leighton Pritchard
• [Bioperl-l] Phylo/Phylip/Consense   Jose .
• [Bioperl-l] BlastPlus Masker   Mark A. Jensen
• [Bioperl-l] How to set "complexity" param using EUtilities   Phillip San Miguel
  • [Bioperl-l] How to set "complexity" param using EUtilities   Phillip San Miguel
• [Bioperl-l] Fwd: [Utilities-announce] NCBI Revised E-utility Usage Policy   Peter
  • [Bioperl-l] Fwd: [Utilities-announce] NCBI Revised E-utility Usage Policy   Chris Fields
    • [Bioperl-l] Fwd: [Utilities-announce] NCBI Revised E-utility Usage Policy   Peter
      • [Bioperl-l] [Open-bio-l] Fwd: [Utilities-announce] NCBI Revised E-utility Usage Policy   Hilmar Lapp
      • [Bioperl-l] [Open-bio-l] Fwd: [Utilities-announce] NCBI RevisedE-utility Usage Policy   Mark A. Jensen
      • [Bioperl-l] [Open-bio-l] Fwd: [Utilities-announce] NCBI RevisedE-utility Usage Policy   Smithies, Russell
      • [Bioperl-l] [Open-bio-l] Fwd: [Utilities-announce] NCBI RevisedE-utility Usage Policy   Chris Fields
      • [Bioperl-l] [Open-bio-l] Fwd: [Utilities-announce] NCBIRevisedE-utility Usage Policy   Kevin Brown
      • [Bioperl-l] Fwd: [Utilities-announce] NCBI Revised E-utility Usage Policy   Chris Fields
• [Bioperl-l] Codeml runtime error   Thomas Sharpton
  • [Bioperl-l] Codeml runtime error   Dave Messina
    • [Bioperl-l] Codeml runtime error   Thomas Sharpton
      • [Bioperl-l] Codeml runtime error   Dave Messina
• [Bioperl-l] From Anand - a question on querying ncbi's genomeprj with Bio::DB::Eutilities   Anand Venkatraman
• [Bioperl-l] GSoC mentors mailing list   Robert Buels
• [Bioperl-l] aacomp.pl problem   Radwen Aniba
  • [Bioperl-l] aacomp.pl problem   Dave Messina
• [Bioperl-l] aacomp.pl problem   Dave Messina
• [Bioperl-l] BioPerl Google SOC project   Mark A. Jensen
  • [Bioperl-l] BioPerl Google SOC project   Alok
    • [Bioperl-l] BioPerl Google SOC project   Mark A. Jensen
      • [Bioperl-l] BioPerl Google SOC project   Chris Fields
• [Bioperl-l] aacomp.pl problem   Dave Messina
  • [Bioperl-l] aacomp.pl problem   Chris Fields
    • [Bioperl-l] aacomp.pl problem   Radwen Aniba
• [Bioperl-l] BioPerl and the Google Summer of Code   Chris Fields
  • [Bioperl-l] BioPerl and the Google Summer of Code   Mark A. Jensen
    • [Bioperl-l] BioPerl and the Google Summer of Code   Chris Fields
      • [Bioperl-l] BioPerl and the Google Summer of Code   Robert Buels
• [Bioperl-l] Running Smith Waterman alignments in BioPerl   Adam Witney
  • [Bioperl-l] Running Smith Waterman alignments in BioPerl   Chris Fields
    • [Bioperl-l] Running Smith Waterman alignments in BioPerl   Adam Witney
• [Bioperl-l] SeqIO issue? EUtilities Cookbook   Phillip San Miguel
  • [Bioperl-l] SeqIO issue? EUtilities Cookbook   Chris Fields
    • [Bioperl-l] SeqIO issue? EUtilities Cookbook   Phillip San Miguel
      • [Bioperl-l] SeqIO issue? EUtilities Cookbook   Chris Fields
      • [Bioperl-l] SeqIO issue? EUtilities Cookbook   Phillip SanMiguel
    • [Bioperl-l] SeqIO issue? EUtilities Cookbook   Peter
• [Bioperl-l] Announcing OBF Summer of Code - please forward!   Robert Buels
• [Bioperl-l] Error during installation of 1.6.1   Wollenberg, Kurt (NIH/NIAID) [C]
  • [Bioperl-l] Error during installation of 1.6.1   Mark A. Jensen
• [Bioperl-l] From Anand - a question on querying ncbi's genomeprj with Bio::DB::Eutilities   Anand Venkatraman
• [Bioperl-l] Regarding Google Summer of Code   Shweta Jha
  • [Bioperl-l] Regarding Google Summer of Code   Robert Buels
• [Bioperl-l] about biblio   Nicolas Turenne
  • [Bioperl-l] about biblio   Martin Senger
  • [Bioperl-l] about biblio   Martin Senger
• [Bioperl-l] Trouble about Bio::Tools::Run::Alignment::Clustalw   click xu
  • [Bioperl-l] Trouble about Bio::Tools::Run::Alignment::Clustalw   Smithies, Russell
    • [Bioperl-l] Trouble about Bio::Tools::Run::Alignment::Clustalw   click xu
      • [Bioperl-l] Trouble about Bio::Tools::Run::Alignment::Clustalw   Chris Fields
• [Bioperl-l] Google Summer of Code   Robert Schaefer
• [Bioperl-l] GSoC 2010   Anil Lal
• [Bioperl-l] AlignIO formats   Bernd Web
  • [Bioperl-l] AlignIO formats   Peter Cock
• [Bioperl-l] summer code project on Bioperl   Jun Yin

Last message date: Wed Mar 31 17:28:59 EDT 2010
Archived on: Thu Apr 1 08:52:49 EDT 2010

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