[Bioperl-l] Write segments with Bio::Tools::GFF

Daniel Standage daniel.standage at gmail.com
Wed Nov 3 14:42:07 EDT 2010


I've got a simple script that is filtering some GFF3 data. The
Bio::Tools::GFF class has methods for reading and writing features and
reading regions (segments), but I cannot find a method for writing regions.
It's not hard to just print out the sequence-region line from the
LocatableSeq object, but then these lines are printed out before the
gff-version line (which is a no-no). Any suggestions about how to handle


Daniel S. Standage
Graduate Research Assistant
Bioinformatics and Computational Biology Program
Iowa State University

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