[Bioperl-l] parsing PubMed retrievals

Chris Fields cjfields at illinois.edu
Fri Nov 5 00:28:01 EDT 2010


It seems that in some cases a webenv/querykey are not returned.  I have committed a fix to github for this which seems to fix the problem from our end.

https://github.com/bioperl/bioperl-live/commit/7c64e8410d291dbd7097b2cd8fc948d95063d153

chris

On Nov 4, 2010, at 7:45 PM, Tom Keller wrote:

> Greetings,
> I'm getting the following error from the bioplerl 1.6.1 example
> 
> $ perl biblio-eutils-example.pl<http://biblio-eutils-example.pl>
> Can't call method "text" on an undefined value at /Library/Perl/5.10.0/Bio/DB/Biblio/eutils.pm line 378.
> 
> 
> Any suggestions for getting this to work?
> 
> thanks,
> 
> 
> Tom
> MMI DNA Services Core Facility<http://www.ohsu.edu/xd/research/research-cores/dna-analysis/>
> 503-494-2442
> kellert at ohsu.edu<mailto:kellert at ohsu.edu>
> Office: 6588 RJH (CROET/BasicScience)
> 
> 
> 
> 
> 
> 
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