[Bioperl-l] Primer3

Chris Fields cjfields at illinois.edu
Fri Nov 5 13:27:13 EDT 2010

This all depends on what version of Primer3 you are using; the Primer3 tools in bioperl-live and bioperl-run do not work with primer3 v2 due to significant changes in the primer3 API.  However, I wrote up a full refactor of these tools, along with tests, here:


This includes both the wrapper and the parser (see the test files for examples on how to run them).  They have been renamed because of a change in the module API.  Let me know if they work for you.


On Nov 5, 2010, at 10:52 AM, alpita at uvigo.es wrote:

> Hi
> I am a PhD-student working with EST sequences. I have got an input file for Primer3 and the program does not run. I try directly in the windows console and with Bioperl. I suppose the problem is with the syntax, because I have never used these tools, so I would appreciate some help.
> How can I invoked my input file in primer 3? If it is easy to run it with BioPerl, tell me
> Thank you very much
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

More information about the Bioperl-l mailing list