[Bioperl-l] question about Bio::Tools::Run::RemoteBlast

Smithies, Russell Russell.Smithies at agresearch.co.nz
Tue Nov 9 15:08:23 EST 2010


Not sure if this will work but have you tried using STDOUT as the filename then piping all the output to a single file?
The other (much simpler) option is just concatenate all the outputs into a single file when it's finished.

--Russell

-----Original Message-----
From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of njauxiongjie
Sent: Tuesday, 9 November 2010 10:05 p.m.
To: bioperl-l
Subject: [Bioperl-l] question about Bio::Tools::Run::RemoteBlast

Hi, 

I have used the scripts list in section of "SYNOPSIS" in th webpage http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Tools/Run/RemoteBlast.pm.

there are two line of the code like below:
my $filename = $result->query_name()."\.out";
          $factory->save_output($filename);
this saved the blast result in separated files by the query name.

my question is: how can i save the blast results of all querys in one file?

  

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