[Bioperl-l] parse multi xml
jordi.durban at gmail.com
Mon Nov 22 15:01:34 EST 2010
I'm a newbie in the list although I've been using bioperl for 2 years.
Now I have a problem with a XML file and I don't know how to parse it.
That file has 795 xml top tags (thta's is <?xml version="1.0">) because they
resulted from Blast2go software the usage and I suppose the file is the
outcome of multiple blast results concatenation.
Well, I would like to split all 795 different xml chunks in 795 different
files in order to parse them looking for the best hit.
The problem appears using the blastxml parse
(and that's a personal opinion) there's another top tag not expected and I
get a error message once the first blast result was parsed.
How can I do that split function?
I hope I was clear
More information about the Bioperl-l