kris.richardson at tufts.edu
Tue Nov 23 12:10:56 EST 2010
I have a list mRNA target positions, for various mRNAs and I also have the RefSeq accession NM_#s for their genes and mRNA (ex; gene: NM_198155 --- mRNA positions: NM_004649: 800-890).
I would like to use this info to pull the chromosomal coordinates of NM_198155 corresponding to the resulting transcript positions NM:_004649:800-890. I am familiarizing myself with bioperl and GeneMapper seems like it can provide this info. However, the documentation on the module code is sparse, and there are no examples. I was wondering if anyone has experience with this and could point me in the right direction, or perhaps provide some example code?
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