[Bioperl-l] fastq Problem

Chris Fields cjfields at illinois.edu
Tue Oct 12 10:51:41 EDT 2010


Yes, but you need to use the latest CPAN release or bioperl-live; anything older than v. 1.6.1 will not convert Illumina reads correctly.

chris

On Oct 12, 2010, at 9:20 AM, shalabh sharma wrote:

> Hi,
>    I have data from illumina, i can read the data by using Bio::SeqIO but
> when i am writing it back its writing in fasta format.
> 
> Is there anyway i can write it back in fastq format?
> 
> Thanks
> Shalabh
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