[Bioperl-l] DNAStatistics

Dave Messina David.Messina at sbc.su.se
Mon Oct 18 14:23:18 EDT 2010


Hi Sarah,

Usually "unintialized value" errors mean you're not trying to read from an empty variable.

I would check that all of the data you're passing to calc_KaKs_pair does contain a value.


> My alignment object has gaps, but I believe this module handles gaps.

I'm not sure about that; I'd have to check. Did you try handing it some ungapped data to see if the errors go away?



Dave




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