[Bioperl-l] IPC/Run.pm?

Chris Fields cjfields at illinois.edu
Tue Oct 19 16:45:55 EDT 2010


If you mean IPC::Run, I'm not sure.  I don't think BioPerl-Run was ever a part of Strawberry Perl Pro.

I do know there are some warnings that will pop up with BioPerl when using perl 5.12; these have been fixed in the github repo but haven't made their way into a release yet.

chris

On Oct 19, 2010, at 3:38 PM, T D wrote:

> Thank you. I downloaded IPC::Run and the code seems to be working now. Is
> Run.pm no longer part of the latest Strawberry Perl installation (v5.12.1)?
> 
> 
> On Tue, Oct 19, 2010 at 1:33 PM, Chris Fields <cjfields at illinois.edu> wrote:
> 
>> No, IPC::Run is different than IPC::Run3:
>> 
>> http://search.cpan.org/dist/IPC-Run/
>> http://search.cpan.org/dist/IPC-Run3/
>> 
>> Both should work under Windows, not sure about Windows7 but I can't see why
>> they wouldn't work.
>> 
>> chris
>> 
>> On Oct 19, 2010, at 12:28 PM, T D wrote:
>> 
>>> Hi,
>>> 
>>> I'm new to BioPerl and Perl in general, and I'm trying to get
>>> StandAloneBlastPlus to run. I got the latest versions using git and
>>> downloaded bioperl-live  and bioperl-run.  I am having issues with Perl
>> not
>>> finding modules. Here is my error:
>>> 
>>> Can't locate IPC/Run.pm in @INC
>>> 
>>> Where is this module located? I am running Windows 7. I did a search for
>> the
>>> Run.pm and could only find IPC/*Run3.pm* under my Perl installation. Is
>>> Run.pm the older version? I have Perl v5.12.1 installed.
>>> 
>>> Thanks in advance!
>>> Tracey
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>> 
>> 
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