[Bioperl-l] IPC/Run.pm?

Robert Buels rmb32 at cornell.edu
Wed Oct 20 20:27:36 EDT 2010


Ah, the joys of optional deps.

You know, bioperl-run does not have that many deps right now.  Why don't 
we just make those optional ones required?

R


Chris Fields wrote:
> If you mean IPC::Run, I'm not sure.  I don't think BioPerl-Run was ever a part of Strawberry Perl Pro.
> 
> I do know there are some warnings that will pop up with BioPerl when using perl 5.12; these have been fixed in the github repo but haven't made their way into a release yet.
> 
> chris
> 
> On Oct 19, 2010, at 3:38 PM, T D wrote:
> 
>> Thank you. I downloaded IPC::Run and the code seems to be working now. Is
>> Run.pm no longer part of the latest Strawberry Perl installation (v5.12.1)?
>>
>>
>> On Tue, Oct 19, 2010 at 1:33 PM, Chris Fields <cjfields at illinois.edu> wrote:
>>
>>> No, IPC::Run is different than IPC::Run3:
>>>
>>> http://search.cpan.org/dist/IPC-Run/
>>> http://search.cpan.org/dist/IPC-Run3/
>>>
>>> Both should work under Windows, not sure about Windows7 but I can't see why
>>> they wouldn't work.
>>>
>>> chris
>>>
>>> On Oct 19, 2010, at 12:28 PM, T D wrote:
>>>
>>>> Hi,
>>>>
>>>> I'm new to BioPerl and Perl in general, and I'm trying to get
>>>> StandAloneBlastPlus to run. I got the latest versions using git and
>>>> downloaded bioperl-live  and bioperl-run.  I am having issues with Perl
>>> not
>>>> finding modules. Here is my error:
>>>>
>>>> Can't locate IPC/Run.pm in @INC
>>>>
>>>> Where is this module located? I am running Windows 7. I did a search for
>>> the
>>>> Run.pm and could only find IPC/*Run3.pm* under my Perl installation. Is
>>>> Run.pm the older version? I have Perl v5.12.1 installed.
>>>>
>>>> Thanks in advance!
>>>> Tracey
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>>>
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> 
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