[Bioperl-l] how to download PDB files using Bioperl script

Jun Yin jun.yin at ucd.ie
Fri Oct 22 12:12:45 EDT 2010


Hi, Ashwani,

I havenot found any module in BioPerl for downloading PDB files, though
Bio::Structure::IO::pdb can parse PDB files.

However, PDB provides RESTful service
(http://www.rcsb.org/pdb/software/rest.do). You can write perl scripts to
batch downloading the proteins.

Cheers,
Jun Yin
Ph.D. student in U.C.D.

Bioinformatics Laboratory
Conway Institute
University College Dublin


-----Original Message-----
From: bioperl-l-bounces at lists.open-bio.org
[mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of ashwani sharma
Sent: Thursday, October 21, 2010 9:39 AM
To: bioperl-l at lists.open-bio.org
Subject: [Bioperl-l] how to download PDB files using Bioperl script

Hi All,


I have around 150 pdb file names and I need to download them from Protein
Data Bank. I wonder if someone could tell me how to do it by using Bioperl.

Thanks in advance.

Regards,
Ashwani
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