[Bioperl-l] about git and perl5lib

Dimitar Kenanov dimitark at bii.a-star.edu.sg
Fri Oct 29 04:29:53 EDT 2010


Hi guys,
i am sorry if this sounds stupid but i have problem with the PERL5LIB 
and the GIT version of BioPerl(BP). I downloaded the BP-live and BP-run 
from git. I use Slackware so I added the following line in bashrc:

  export 
PERL5LIB=$HOME/Bioperl_git/bioperl-live:$HOME/Bioperl_git/bioperl-run:$PERL5LIB

But when i start a script using StandAloneBlastPlus i see perl cant find it:

Can't locate Bio/Tools/Run/StandAloneBlastPlus.pm in @INC (@INC 
contains: /home/domine/Bioperl_git/bioperl-live 
/home/domine/Bioperl_git/bioperl-run 
/usr/lib64/perl5/5.10.1/x86_64-linux-thread-multi 
/usr/lib64/perl5/5.10.1 
/usr/lib64/perl5/site_perl/5.10.1/x86_64-linux-thread-multi 
/usr/lib64/perl5/site_perl/5.10.1 /usr/lib64/perl5/site_perl 
/usr/lib64/perl5/vendor_perl/5.10.1/x86_64-linux-thread-multi 
/usr/lib64/perl5/vendor_perl/5.10.1 /usr/lib64/perl5/vendor_perl

It seems Perl should find the module but it doesnt. Any idea where i 
could have made a mistake?

Btw with:  perl -MBio::Perl -le 'print Bio::Perl->VERSION;' i get 1.0069

Thank you
Dimitar





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