thomas.sharpton at gmail.com
Wed Sep 1 17:29:26 EDT 2010
We forked the SearchIO parser for hmmer3 and hmmer2. You'll want to
use the HMMER3 version, as found here:
Hope this helps,
On Sep 1, 2010, at 1:56 PM, shalabh sharma wrote:
> Hi ,
> I am trying to parse hmmsearch report (from HMMER3). I am using
> script mentioned here:
> I am not getting anything but this "amoA_10genes_align.fasta.2
> [M=247] for
> HMM" as the output, i am not even getting any error.
> I am attaching the hmmsearch report (just a test report) which i
> tried to
> test against the parser.
> I would really appreciate if anyone can help me out.
> Shalabh Sharma
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