[Bioperl-l] Bio::SearchIO::hmmer

Thomas Sharpton thomas.sharpton at gmail.com
Thu Sep 2 12:34:07 EDT 2010


So it is! I'm paying attention, I swear I am....

Shalabh, if the HMMER3 version of SearchIO doesn't solve your problem,  
do let us know.

Best,
Tom

On Sep 2, 2010, at 1:44 AM, Kai Blin wrote:

> On Wed, 1 Sep 2010 14:29:26 -0700
> Thomas Sharpton <thomas.sharpton at gmail.com> wrote:
>
> Hi,
>
>> We forked the SearchIO parser for hmmer3 and hmmer2. You'll want to
>> use the HMMER3 version, as found here:
>>
>> http://github.com/bioperl/bioperl-hmmer3
>
> Actually it's now included in the bioperl-live repository, but the  
> code
> hasn't made it into a release yet.
>
> http://github.com/bioperl/bioperl-live.git
>
> Cheers,
> Kai
> -- 
> Dipl.-Inform. Kai Blin         kai.blin at biotech.uni-tuebingen.de
> Institute for Microbiology and Infection Medicine
> Division of Microbiology/Biotechnology
> Eberhard-Karls-University of Tübingen
> Auf der Morgenstelle 28                 Phone : ++49 7071 29-78841
> D-72076 Tübingen                        Fax :   ++49 7071 29-5979
> Deutschland
> Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben




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