[Bioperl-l] Bio::Seq, search for specific features
fs5 at sanger.ac.uk
Tue Sep 7 08:09:52 EDT 2010
I am working a lot with feature-rich Bio::Seq objects these days and
thought that it would be really nice if I could do something like:
my @features = $bio_seq_obj->get_SeqFeatures(-by_id => 'my_gene');
instead of having to grep for the feature every time.
There could then be 'by_tag' and 'by_region' options as well.
According to the Bio::Seq docs, something like this seems to be planned
at some stage. I would be willing to contribute to this feature if I can
and if this isn't already being implemented by somebody else.
Does anybody know the state of this feature?
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