[Bioperl-l] extract UTR from cds and mRNA coordinates

Alper Yilmaz alperyilmaz at gmail.com
Wed Sep 8 12:47:42 EDT 2010


Hi,

I have a GFF file listing mRNA and CDS coordinates for every
transcript of each gene. I need to extract 5'UTR and 3'UTR coordinates
based on that information. I was wondering, if there's already made
script for that purpose that you're aware of.

I already uploaded the GFF file into Bio::DB::SeqFeature database, so
I can utilize both flat file or database based scripts.

thanks,

Alper Yilmaz
Post-doctoral Researcher
Plant Biotechnology Center
The Ohio State University
1060 Carmack Rd
Columbus, OH 43210
(614)688-4954


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