[Bioperl-l] Circular genomes

David Breimann david.breimann at gmail.com
Sun Sep 12 09:16:29 EDT 2010


Hello,

As continuation to
http://lists.open-bio.org/pipermail/bioperl-l/2010-August/033904.html, I
would like to ask:
Was the fix implemented yet? That is, are GFF3 created for circular genomes
comply with GFF3 specs for such genomes?
I just find it difficult to keep track using git ,so I'm not sure if this
was already handled.

Also, will the stat and end coordinates of such genes loaded from a GFF3
file will be "normal" (i.e. no coordinate is larger than the size of the
genome) or just as written in the GFF3 (which demands that end > start even
if end > genome length)?

Thanks,
David


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