[Bioperl-l] Installing Bioperl using CPAN on Suse 11.3

tim timmcilveen at talktalk.net
Mon Sep 13 19:07:00 EDT 2010


Hi,
I have just installed Bioperl on my Linux system using the CPAN install. The 
install summary is as follows:
Test Summary Report
-------------------
t/RemoteDB/GenPept.t                       (Wstat: 256 Tests: 21 Failed: 1)
  Failed test:  17
  Non-zero exit status: 1
t/RemoteDB/Query/GenBank.t                 (Wstat: 256 Tests: 18 Failed: 1)
  Failed test:  9
  Non-zero exit status: 1
  Parse errors: Bad plan.  You planned 21 tests but ran 18.
t/RemoteDB/Taxonomy.t                      (Wstat: 512 Tests: 103 Failed: 2)
  Failed tests:  15, 98
  Non-zero exit status: 2
t/Root/RootIO.t                            (Wstat: 7424 Tests: 30 Failed: 0)
  Non-zero exit status: 29
  Parse errors: Bad plan.  You planned 31 tests but ran 30.
Files=329, Tests=18407, 512 wallclock secs ( 6.19 usr  0.91 sys + 156.68 cusr  
9.16 csys = 172.94 CPU)
Result: FAIL
Failed 4/329 test programs. 4/18407 subtests failed.
  CJFIELDS/BioPerl-1.6.1.tar.gz
  ./Build test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
  reports CJFIELDS/BioPerl-1.6.1.tar.gz
Running Build install
  make test had returned bad status, won't install without force
Failed during this command:
 CJFIELDS/BioPerl-1.6.1.tar.gz                : make_test NO

Is Bioperl properly installed? During the install process I was getting quite 
a lot of this error (100's of instances):
'replacement list longer than search list . This happened with t/tools, t/seq 
/ t/search and many others.

Any advice would be great.
Tim



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