[Bioperl-l] mpiblast

Dave Messina David.Messina at sbc.su.se
Thu Sep 16 14:25:57 EDT 2010


> Is the there a standalone like module that allows you to easily call mpiblast?

No, although with Mark Jensen's new WrapperBase system, writing one would probably be pretty straightforward.

	http://www.bioperl.org/wiki/Module:Bio::Tools::Run::WrapperBase


> I'm assuming seqio with parse a mpiblast output file correctly?

Yes, although I see that a new version of mpiblast was recently released. 

Has anyone out there tested BioPerl against mpiBLAST 1.6.0 output yet?


Dave




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