[Bioperl-l] Extracting sequences from GFF3
david.breimann at gmail.com
Sat Sep 18 06:45:13 EDT 2010
As you know, GFF3 files can contain FASTA sequences after the features.
How do I extract a specific FASTA sequence given it's ID?
my $gffio = Bio::Tools::GFF->new(
-gff_version => 3
print Dumper $gffio->get_seqs();
but $gffio->get_seqs() seems to return nothing, although the GFF3 has
sequences and is also valid.
By the way, I am able to parse the features themselves (using
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